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New and Updated Online Tutorials for ArrayExpress, Allen Brain Atlas and CleanEx from OpenHelix

  • to query the archive of ArrayExpress for records of experiments, arrays, and protocols, and to export data
  • to query for expression profiles of genes, and identify groups of genes with similar expression profiles
  • to find conditions under which a gene is differentially expressed, and to find genes differentially expressed under certain conditions

Allen Brain Atlas
  • to access the Allen Reference Atlas, atlas legend, and structure ontology
  • to perform effective gene expression searches of the Allen Mouse Brain Atlas
  • to locate gene expression image datasets from the search results using the List View and Thumbnail Views
  • how to use the Single and Multiple Image Viewers
  • how to download and use the Brain Explorer application

  • to find information on transcript abundance and expression targets by gene names
  • to extract numerical expression data from CleanEx
  • to search for datasets or subsets representing biological conditions of interest, using MeSH terms
  • to identify over- or under-expressed genes in a dataset, and examine

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