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Date:7/22/2010

7.3 SEQUENCE ALIGNMENT PLATFORMS

7.3.1 SEQUENCE ANALYSIS (ALIGNMENT)

7.3.1.1 Consensus sequence and translation

7.3.1.2 Multiple sequence alignment

7.3.1.3 Phylogenetic tree building

7.3.2 LAB END SEQUENCE ANALYSIS

7.3.2.1 Contig assembly

7.3.2.2 Primer design and cloning

7.4 SEQUENCE MANIPULATION PLATFORMS

7.4.1 RANDOM SEQUENCES & FORMAT CONVERSION

7.4.2 SEQUENCE ANALYSIS (SEQUENCE MANIPULATION)

7.4.3 SEQUENCE FIGURES

7.5 SEQUENCE ANALYSIS PLATFORMS

7.5.1 DNA SEQUENCE ANALYSIS PLATFORMS

7.5.1.1 Restriction, detect repeats, and unusual patterns

7.5.1.2 Align sequences

7.5.1.3 Search tools

7.5.2 ASSIGNMENT OF PROTEIN FUNCTION

7.5.2.1 Search pattern, motif, profiles domains, families

7.5.2.2 Pathways analysis and computation

7.5.2.3 Protein-protein interaction and protein annotation

7.5.2.4 New sequence alert

7.5.3 RNA ANALYSIS PLATFORM

7.5.4 ANALYZE AND MODEL 3D STRUCTURE

7.5.4.1 3D analysis and viewers

7.5.4.2 Homology modeling

7.5.5 PHYLOGENETIC ANALYSIS

7.5.5.1 Multiple sequence alignment

7.5.5.2 Organism classification
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