Navigation Links
GenomeQuest Places ChIP-Seq Workflow Solution On SDM “Cloud”
Date:11/11/2009

modeling. For the reference databases, users can select from a list of GenomeQuest aggregated and qualified databases with extended annotations. The environment also includes an interactive sequence browser where researchers query and analyze run results.

GenomeQuest CEO, Ron Ranauro, comments, “Our ChIP-Seq workflow is a great example of the power of SDM in the new era of next generation sequencing. Our goal is to provide researchers state-of-the-art, easy-to-use tools placed in a world-class, cloud computing infrastructure so they can focus on the expanding science, make great discoveries, and share their work – all from a web browser.” He continues, “And because our SDM is based on a web 2.0 open platform, researchers can be assured that GenomeQuest and our partners will enhance and add more and more NGS-enabled solutions at a compelling pace.”

The interactive sequence browser of the ChIP-Seq workflow includes a table of peak modeling results with columns for gene name and description, chromosome, peak start and stop position, peak length and high point, and all peak statistics. After their analysis, researchers can save all or part of this table as a new annotated database and share it as a reference for follow-on work.

Regarding parameters for ChIP-Seq methods, Nature Methods reports, “These parameters are often not fully known in advance, which means that computational analysis for a given experiment is usually performed iteratively and repeatedly, with results dictating whether additional sequencing is needed and is cost-effective. This means that the choice of software for running ChIP-Seq analysis favors packages that are simple to use repeatedly with multiple datasets.”

The GenomeQuest ChIP-Seq parameters for alignment include the read database, clean-up, low-quality base trimming and removal, and repeat removal. Peak modeling parameters for MACS include the aligned databa
'/>"/>

Source: PRWeb
Copyright©2009 Vocus, Inc.
All rights reserved  

Page: 1 2 3 4

Related biology technology :

1. GenomeQuest, Inc. Announces Digital Gene Expression Solution Within Its Sequence Data Management Platform
2. SABiosciences Ranked 17th on the Best Places to Work Industry Award for Biotech and Pharmaceutical Companies
3. DuPont Named Among Best Places to Work by The Scientist Magazine
4. AMERIGROUP Corporation Named One of Best Places to Work in Healthcare
5. Environmental Tectonics Corporations BioMedical Systems Division Places Two Monoplace Chambers at East Orange (NJ) General Hospital
6. Fujirebio Diagnostics Named One of the Best Places to Work in Pennsylvania
7. Quintiles Named to Computerworld Magazines 100 Best Places to Work in Information Technology List
8. Abbott Named One of the Best Places to Launch a Career by BusinessWeek
9. Health Robotics Announces December Launch of the i.v.SOFT(TM) Workflow Engine at ASHP in Las Vegas
10. MEDRAD Partners with the University of South Florida and Moffitt Cancer Center to Study Workflow and Process Improvements in PET Imaging
11. Bio-Optronics Adds Innovative Electronic Data Capture (EDC) Solution to Clinical Conductor Clinical Trial Management System (CTMS), Continues to Improve Workflow and Productivity
Post Your Comments:
*Name:
*Comment:
*Email:
Related Image:
GenomeQuest Places ChIP-Seq Workflow Solution On SDM “Cloud”
(Date:4/17/2015)... (PRWEB) April 17, 2015 Global ... the GTCbio Stem Cell Summit 2015 April 27 - ... the latest developments in all areas of stem cell ... of stem cells and regenerative medicine. , The ... trials, as well as translational research in stem cell ...
(Date:4/17/2015)... (PRWEB) April 17, 2015 BellBrook ... and marketing support for the powerful Orthogonal Pooled ... Chemical Genomics Center at the Lankenau Institute for ... mission is to measurably improve successful drug discovery ... by offering rare, drug-like libraries available nowhere else, ...
(Date:4/16/2015)... KYOTO and OSAKA, Japan ... iPS Cell Research Application (CiRA) of Kyoto University ... that they will work together to develop clinical ... such as heart failure, diabetes mellitus, neurological disorders ... iPS Cell Applications" (T-CiRA) is designed to expedite ...
(Date:4/16/2015)... South San Francisco, CA (PRWEB) April 16, 2015 ... it is scheduled to report first quarter results on ... Following the announcement, Cytokinetics’ senior management will host a ... operational and financial results and the company’s outlook for ... webcast and can be accessed from the homepage and ...
Breaking Biology Technology:Global Stem Cells Group To Join GTCbio Stem Cell and Regenerative Medicine Summit in Boston, April 27-29, 2015 2Global Stem Cells Group To Join GTCbio Stem Cell and Regenerative Medicine Summit in Boston, April 27-29, 2015 3BellBrook Labs and Lankenau Institute Partner to Accelerate Drug Discovery using Orthogonal Pooled Screening 2CiRA and Takeda Enter 10-year Collaboration on iPS Cell Research 2CiRA and Takeda Enter 10-year Collaboration on iPS Cell Research 3Cytokinetics to Announce First Quarter Results on April 30, 2015 2Cytokinetics to Announce First Quarter Results on April 30, 2015 3
... Oct. 7, 2011 Novelda AS announced today two new antennas ... antenna design is based on a Sinuous Antenna geometry. The antenna ... The upper PCB is the antenna itself; the lower PCB is ... about 70 degrees. This can be lowered by attaching a lens. ...
... AlloSource, ( www.allosource.org ) a leading ... for use in surgical procedures around the world, is ... Denver Business Journal,s inaugural awards program. With ... diminishing employee benefits, the Denver Business Journal ...
... Oct. 6, 2011 ProteinSimple today announced the ... quality control monitoring of protein-based therapeutics. The iCE3 ... 2011 conference, October 9-13, 2011, at Amelia Island, ... monitor product purity closely. Imaged capillary electrophoresis (iCE) ...
Cached Biology Technology:Wideband Antenna for Novelda Nanoscale Impulse Radar 2AlloSource Named One of Denver's Healthiest Employers 2AlloSource Named One of Denver's Healthiest Employers 3ProteinSimple Launches New System for Protein Biologics 2
(Date:3/24/2015)... and Markets ( http://www.researchandmarkets.com/research/hdgz7h/global_iris ) has announced ... 2015-2019" report to their offering. The ... at a CAGR of 23.5 percent over the period ... and the growth prospects of the Global Iris Recognition ... size, the report considers the revenue generated from sales ...
(Date:3/24/2015)... 24, 2015   Crossmatch ™, a leading ... that its U.are.U ® 4500 Fingerprint Readers ... Bros . to achieve PCI compliance for Point-of-Sale ... to the POS terminal, protecting the retailer and ... breaches. With one-third of worldwide ...
(Date:3/23/2015)... , March 23, 2015  In the 2014 fiscal ... case conviction losses. This figure accounts for a fraction ... to The Nilson Report, exceeds $11 billion globally. The ... after a crime has occurred. Investor Mark Saint ... expert Joe Paolella partnered to administer the ...
Breaking Biology News(10 mins):Global Iris Recognition Market 2015-2019 with 3M Cogent, Bioenable Technologies, Cross Match Technology, Iris ID Systems & Safran Dominating 2Crossmatch Fingerprint Readers Help Retailer Prevent Data Breaches at Point-of-Sale 2Polygraph Test Now Used to Protect Investors From Fraud 2Polygraph Test Now Used to Protect Investors From Fraud 3
... DNA (mtDNA) has been used to establish migration and ... before Christopher Columbus sailed to the Americas. New research ... Genetics has used more detailed DNA analysis of ... and burial traditions of ancient Peru. The social ...
... 22, 2012 Frida Kahlo,s many haunting self-portraits have been ... have sold for millions of dollars at auction. Yet, despite ... failed reproduction attempts, relatively little attention has been paid to ... messages manifested in Kahlo,s work and surprised by the apparent ...
... pan-European study published in Science shows that mountain ... often results in raised species numbers on mountain tops, when ... This study, however, also shows that upward shifts can lead ... on detailed surveys of 66 mountain summits distributed between the ...
Cached Biology News:Forensic science used to determine who's who in pre-Columbian Peru 2A new diagnosis for Frida Kahlo's infertility 2A new diagnosis for Frida Kahlo's infertility 3A new diagnosis for Frida Kahlo's infertility 4Accelerating climate change exerts strong pressure on Europe's mountain flora 2
... Fixed clamp trays ... easy Magnetic drive ... rpm 25 mm amplitude ... 25 ml to 2000 ml, including ...
... fluorescent microscopy-based imaging system that accurately counts ... calculates cell viability, in a single test. ... variability associated with the subjective interpretation of ... EasyCount ViaSure Kit, up to six tests ...
... blotting. Get results sooner and save hours of ... Eliminates the need for a membrane transfer step ... are ready-to-use. No reagents to prepare or mix ... required. Guarantees a simple to perform, mistake-free detection ...
... CHEF-DR III variable angle system, 220-240 V, is ... 6 Mb DNA fragments by pulsed field gel ... power module, variable-speed pump, 14 x 13 cm ... 15-well, 1.5 mm thick comb, screened cap, disposable ...
Biology Products: