Navigation Links
GenomeQuest Places ChIP-Seq Workflow Solution On SDM “Cloud”
Date:11/11/2009

modeling. For the reference databases, users can select from a list of GenomeQuest aggregated and qualified databases with extended annotations. The environment also includes an interactive sequence browser where researchers query and analyze run results.

GenomeQuest CEO, Ron Ranauro, comments, “Our ChIP-Seq workflow is a great example of the power of SDM in the new era of next generation sequencing. Our goal is to provide researchers state-of-the-art, easy-to-use tools placed in a world-class, cloud computing infrastructure so they can focus on the expanding science, make great discoveries, and share their work – all from a web browser.” He continues, “And because our SDM is based on a web 2.0 open platform, researchers can be assured that GenomeQuest and our partners will enhance and add more and more NGS-enabled solutions at a compelling pace.”

The interactive sequence browser of the ChIP-Seq workflow includes a table of peak modeling results with columns for gene name and description, chromosome, peak start and stop position, peak length and high point, and all peak statistics. After their analysis, researchers can save all or part of this table as a new annotated database and share it as a reference for follow-on work.

Regarding parameters for ChIP-Seq methods, Nature Methods reports, “These parameters are often not fully known in advance, which means that computational analysis for a given experiment is usually performed iteratively and repeatedly, with results dictating whether additional sequencing is needed and is cost-effective. This means that the choice of software for running ChIP-Seq analysis favors packages that are simple to use repeatedly with multiple datasets.”

The GenomeQuest ChIP-Seq parameters for alignment include the read database, clean-up, low-quality base trimming and removal, and repeat removal. Peak modeling parameters for MACS include the aligned databa
'/>"/>

Source: PRWeb
Copyright©2009 Vocus, Inc.
All rights reserved  

Page: 1 2 3 4

Related biology technology :

1. GenomeQuest, Inc. Announces Digital Gene Expression Solution Within Its Sequence Data Management Platform
2. SABiosciences Ranked 17th on the Best Places to Work Industry Award for Biotech and Pharmaceutical Companies
3. DuPont Named Among Best Places to Work by The Scientist Magazine
4. AMERIGROUP Corporation Named One of Best Places to Work in Healthcare
5. Environmental Tectonics Corporations BioMedical Systems Division Places Two Monoplace Chambers at East Orange (NJ) General Hospital
6. Fujirebio Diagnostics Named One of the Best Places to Work in Pennsylvania
7. Quintiles Named to Computerworld Magazines 100 Best Places to Work in Information Technology List
8. Abbott Named One of the Best Places to Launch a Career by BusinessWeek
9. Health Robotics Announces December Launch of the i.v.SOFT(TM) Workflow Engine at ASHP in Las Vegas
10. MEDRAD Partners with the University of South Florida and Moffitt Cancer Center to Study Workflow and Process Improvements in PET Imaging
11. Bio-Optronics Adds Innovative Electronic Data Capture (EDC) Solution to Clinical Conductor Clinical Trial Management System (CTMS), Continues to Improve Workflow and Productivity
Post Your Comments:
*Name:
*Comment:
*Email:
Related Image:
GenomeQuest Places ChIP-Seq Workflow Solution On SDM “Cloud”
(Date:7/30/2015)...  Discovery Laboratories, Inc. (Nasdaq: DSCO ) ... $1.0M tranche under a previously awarded Phase II ... up to $3.0 million to support continued development ... potential medical countermeasure to mitigate acute and chronic/late-phase ... initial $1.0 million under this grant in October ...
(Date:7/30/2015)... (PRWEB) , ... July 30, 2015 , ... ... for advanced fluid applications and designed for continuous operation up to 1500 bar. ... sterilization-in-place, ensuring safety, efficiency, and preventing toxic contamination. , The Pony™ NS2006L homogenizer ...
(Date:7/29/2015)... Sanofi, un leader mondial ... pour le premier semestre 2015. Le Directeur Général ... Visionner l,interview vidéo et lire la transcription ... Au sommaire de l,interview :  - ... - Diabète - Praluent ...
(Date:7/29/2015)... US-Australian drug discovery company, Novogen Limited (ASX: ... committed to progressing its ground-breaking technology platforms to Phase ... ensure the Company delivers the best value for shareholders. ... , said the Company currently had an extensive program ... programs and academic partnerships and initiatives, and he was ...
Breaking Biology Technology:Discovery Labs Receives $1.0 million under an SBIR Grant in Continuing Support of the Development of Aerosolized KL4 Surfactant to Address Radiation-Induced Lung Injury 2Discovery Labs Receives $1.0 million under an SBIR Grant in Continuing Support of the Development of Aerosolized KL4 Surfactant to Address Radiation-Induced Lung Injury 3GEA Announces the Pony™ NS2006L… a Self-contained, High Pressure Lab Homogenizer for Product Development Ensuring Maximum Efficiency and Safety 2Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 2Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 3Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 4Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 5Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 6Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 7Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 8Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 9Newly Appointed Acting CEO Outlines Immediate Plans for Novogen 10
... in PLoS Medicine , Susan Huang and colleagues ... tool, WHONET-SaTScan, made by integrating two freely available software ... software to microbiology data from patients admitted to a ... years (2002-2006), the authors found that the tool identified ...
... ... for fermenters is projected to reach $180 million by the year 2015. Growth in the ... disposable or single-use fermenters. , ... San Jose, California (PRWEB) February 22, 2010 -- Fermenters are witnessing sizeable growth in demand, ...
... in a special ink infused with nanoparticles, Stanford engineer ... efficiently manufacture lightweight paper batteries and supercapacitors (which, like ... means), as well as stretchable, conductive textiles known as ... mechanical properties of ordinary paper or fabric. While ...
Cached Biology Technology:Tool identifies infection clusters; rate of T cell drop not helpful in decision to start treating HIV 2Tool identifies infection clusters; rate of T cell drop not helpful in decision to start treating HIV 3Tool identifies infection clusters; rate of T cell drop not helpful in decision to start treating HIV 4US Fermenters Market to Reach $180 million by 2015, According to New Report by Global Industry Analysts, Inc. 2US Fermenters Market to Reach $180 million by 2015, According to New Report by Global Industry Analysts, Inc. 3Nanotechnology sparks energy storage on paper and cloth 2Nanotechnology sparks energy storage on paper and cloth 3
(Date:7/31/2015)... de julho de 2015 A 10 a. ... será realizada pela BGI de 22-25 de outubro de 2015, ... A conferência está celebrando seu 10 o. aniversário ... se tornou uma das reuniões mais influentes do mundo ... mais dinâmicos, entusiastas e prazerosos. A ...
(Date:7/31/2015)... julio de 2015 La 10 th International ... medio de BGI del 22 al 25 de octubre de 2015 ... Este año, la conferencia celebra su décimo aniversario. Desde su ... una de las reuniones anuales más influyentes del mundo en ... más dinámicas, entusiastas y mejores a nivel científico. ...
(Date:7/31/2015)... OXFORD, Conn. , Jul. 31, 2015 NXT-ID, ... a biometric authentication company focused on the growing mobile ... announces that it has filed provisional patent 62/198989 for ... This invention highlights a method to advance crypto-currencies ... technology by introducing a common, uniform way to manage ...
Breaking Biology News(10 mins):A 10a. Conferência Internacional sobre Genômica (ICG-10) será em outubro 2A 10a. Conferência Internacional sobre Genômica (ICG-10) será em outubro 3La 10th International Conference on Genomics (ICG-10) se llevará a cabo en octubre 2La 10th International Conference on Genomics (ICG-10) se llevará a cabo en octubre 3NXT-ID Patents Electronic Crypto-Currency Management Technology 2NXT-ID Patents Electronic Crypto-Currency Management Technology 3NXT-ID Patents Electronic Crypto-Currency Management Technology 4
... Polar Regions and the deep sea is the focus ... involving over 200 international scientists. The CAREX (Coordination ... roadmap outlines priorities for future research into life in ... Life has evolved thousands of strategies to adapt and ...
... nearly 390,000 chemical compounds had led scientists to a ... the brain with effects promising for new drugs for ... which blocks formation of cholesterol in the brain, in ... G. Kazantsev and colleagues previously discovered that blocking cholesterol ...
... lifted off on board India,s Polar Satellite Launch Vehicle ... on 20 April 2011. The X-SAT, developed ... collaboration with DSO National Laboratories, was launched from the ... India. The wholly made-in-Singapore satellite was one ...
Cached Biology News:Life in extreme environments paves the way for international collaboration 2Singapore's first locally made satellite launched into space 2
PPOX Immunogen: PPOX (AAH02357, 378 a.a. ~ 478 a.a) partial recombinant protein with GST tag. Storage: -20 C, Avoid Freeze/Thaw Cycles *Available for distribution in the US only...
KRIT1 Immunogen: KRIT1 (NP_004903, 637 a.a. ~ 737 a.a) partial recombinant protein with GST tag. Storage: -20 C, Avoid Freeze/Thaw Cycles *Available for distribution in the US only...
Rabbit polyclonal to MAP3K12 ( Abpromise for all tested applications). Antigen: Synthetic peptide conjugated to KLH from the C-terminal region of human MAP3K12 Entrez Gene ID: 7786 Swiss ...
Anti-MMP-25 (Membrane-type MMP-6, Mt6MMP), hinge region; rabbit host...
Biology Products: