Navigation Links
Saint Louis University researchers discover a way to detect new viruses
Date:6/17/2013

ST. LOUIS -- In research published in Biochemical and Biophysical Research Communications, Saint Louis University researchers describe a technology that can detect new, previously unknown viruses. The technique offers the potential to screen patients for viruses even when doctors have not identified a particular virus as the likely source of an infection.

In the new approach, scientists use blood serum as a biological source to categorize and discover viruses.

Taking advantage of the complete deciphering of the human genome, SLU researchers used a next-generation sequencing (NGS) approach called transcriptome subtraction. With this process, the research team subtracted the entire human genetic sequence from the genetic material in the blood they were examining. By studying what remained, they were able to identify viral genetic material in the blood.

"We have discovered a technology that allows us to detect new viruses," said Adrian Di Bisceglie, M.D., chairman of the department of internal medicine at Saint Louis University. "We isolate DNA and RNA, amplify the amount of genetic material present in the blood, do ultra-deep sequencing and use an algorithm to search for matches for every known piece of genetic code, both human and for microbes.

"Once we remove the known portions, we're ultimately left with new viruses."

When doctors suspect that a patient has a viral infection, it can be difficult to determine which virus is the culprit.

One way to test for the presence of a virus is to grow it in the lab from a biological sample, like tissue or blood, from the patient. However, that approach won't work if tissue isn't available, if there is no logical starting place for deciding which viruses to screen for (such as knowing that a patient was exposed to a particular virus), or in a "hit and run" viral infection, in which case there is a narrow time frame for tissue sampling.

Another option is to search for viral genetic material in the body.

There are several methods that use this approach (such as immune based-library screening, mass spectrometry and microarray), but the most useful is next-generation sequencing.

After sorting out the human genetic material from the viral material, the research team compared the viral material against database libraries of known viruses. This identifies any known viruses in the blood.

After this second subtraction, researchers examined the remaining, unidentified material, and sorted out bacteria, phages, and viruses, among other material, based on specific protein signatures that mark each type of microorganism. The discovered, previously unknown viruses remain candidates for further investigation.

Key to the research team's success was the discovery of how to amplify the genetic material in the blood, says study researcher Xiaofeng Fan, M.D., associate professor of internal medicine at Saint Louis University.

In the past, blood serum wasn't used to its full potential because RNA degrades too quickly, leaving too little material to study. The amplification process used by the research team eliminated this problem.

The approach that the research team developed has the potential for immediate application in clinical situations concerning an unknown viral infection, like, for example, the recent outbreak of a SARS-like virus in Saudi Arabia.

In addition to offering a way to discover new viruses and test for known viruses in ill patients, this new technology could provide a valuable approach for those in the biodefense field looking for a way to quickly spot existing bio-threats.

Di Bisceglie says this technique will contribute to our understanding of the many viruses that live in the human body.

"Just as the human microbiome project is chronicling the bacteria that live and co-exist in every person, we also are studying the human virome to know more about the viruses that live in all of us. We believe not all are harmful and some may even be beneficial," Di Bisceglie said.

Saint Louis University has applied for patent protection of this technology and will now actively pursue its commercialization.

"Dr. Di Bisceglie is a recognized world leader in virology and we expect scientific companies and commercial enterprises in this field to have strong interest in the new technique," said Graeme Thomas, director of SLU's office of technology management.


'/>"/>

Contact: Carrie Bebermeyer
bebermcl@slu.edu
314-977-8015
Saint Louis University
Source:Eurekalert

Related biology news :

1. From scourge to saint: E. coli bacteria becomes a factory - to make cheaper, faster pharmaceuticals
2. Vitamin D holds promise in battling a deadly breast cancer, Saint Louis University researchers say
3. In a fight to the finish, Saint Louis University research aims knockout punch at hepatitis B
4. Saint Louis University, University of Toronto biologists help decode turtle genome
5. BP Deepwater Horizon oil spill exacerbated existing environmental problems in Louisiana marshes
6. SMU professor Louis Jacobs honored with prestigious award from Texas science teachers
7. Louisiana Tech University professor earns national honor from Society of American Foresters
8. University of Houston study shows BP oil spill hurt marshes, but recovery possible
9. University of Alberta led research may have discovered how memories are encoded in our brains
10. BGI, University of Helsinki and Wuhan University sign a MOU concerning cooperation on genomics
11. Marshall University study may lead to new treatments for prostate cancer
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:3/15/2016)... , March 15, 2016 ... report published by Transparency Market Research "Digital Door Lock Systems ... Forecast 2015 - 2023," the global digital door lock systems ... Mn in 2014 and is forecast to grow at a ... of micro, small and medium enterprises (MSMEs) across the world ...
(Date:3/11/2016)... Germany , March 11, 2016 http://www.apimages.com ... - Cross reference: Picture is available at AP Images ( http://www.apimages.com ... from DERMALOG will be used to produce the new refugee identity ... other biometric innovations, at CeBIT in Hanover ... scanner from DERMALOG will be used to produce the new refugee ...
(Date:3/9/2016)... NEW YORK , March 9, 2016 ... current and future states of the RNA Sequencing (RNA ... in segments such as instruments, tools and reagents, data ... Analyze various segments of the RNA-Sequencing market such ... RNA-Sequencing services Identify the main factors affecting each segment ...
Breaking Biology News(10 mins):
(Date:5/27/2016)... May 27, 2016 At present, the ... in this space know that volatility is what makes this ... on ActiveWallSt.com: Synta Pharmaceuticals Corp. (NASDAQ: SNTA ), ... (NASDAQ: LPTN ), and Heat Biologics Inc. (NASDAQ: ... to the technical alerts for these stocks at: ...
(Date:5/26/2016)... and READING, England , ... ( http://www.indegene.com ), a leading global provider of ... pharmaceutical and healthcare organisations and TranScrip ( http://www.transcrip-partners.com ... support throughout the product lifecycle, today announced the ... of IntraScience.      (Logo: http://photos.prnewswire.com/prnh/20141208/720248 ...
(Date:5/26/2016)... May 26, 2016 Despite the volatility ... in this space. Today,s pre-market research on ActiveWallSt.com directs the ... Inc. (NASDAQ: RDUS ), Cerus Corp. (NASDAQ: ... ), and Five Prime Therapeutics Inc. (NASDAQ: FPRX ... at: http://www.activewallst.com/ On Wednesday, ...
(Date:5/26/2016)... CA (PRWEB) , ... May 26, 2016 , ... ... and manufacturing company, today announced several positive developments that position the Company for ... a result of the transaction, Craig F. Kinghorn has been appointed Chairman of ...
Breaking Biology Technology: